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Section

Biochemistry Data.Multiplex Serology (Gastric Cancer study)

Data summary

Baseline

Variable Stats / Values Freqs (% of Valid) Graph Missing
multi_gi_b1_case_cardia [factor]
  1. No
  1. Yes
3534 ( 89.0% )
437 ( 11.0% )
511442 (99.2%)
mult_gi_b1_case_duodenalcancer [factor]
  1. No
  1. Yes
3901 ( 98.2% )
70 ( 1.8% )
511442 (99.2%)
multi_gi_b1_case_duodenalulcer [factor]
  1. No
  1. Yes
3771 ( 95.0% )
200 ( 5.0% )
511442 (99.2%)
multi_gi_b1_case_eac [factor]
  1. No
  1. Yes
3944 ( 99.3% )
27 ( 0.7% )
511442 (99.2%)
multi_gi_b1_case_gastriculcer [factor]
  1. No
  1. Yes
3671 ( 92.4% )
300 ( 7.6% )
511442 (99.2%)
multi_gi_b1_case_noncardia [factor]
  1. No
  1. Yes
3471 ( 87.4% )
500 ( 12.6% )
511442 (99.2%)
multi_gi_b1_case_oesophageal [factor]
  1. No
  1. Yes
3471 ( 87.4% )
500 ( 12.6% )
511442 (99.2%)
multi_gi_b1_reproducibility [factor]
  1. No
  1. Yes
3871 ( 97.5% )
100 ( 2.5% )
511442 (99.2%)
multi_gi_b1_subcohort [factor]
  1. No
  1. Yes
1971 ( 49.6% )
2000 ( 50.4% )
511442 (99.2%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Baseline

Variable Stats / Values Freqs (% of Valid) Graph Missing
comments [character]
  1. 16E6 maybe false negative
  1. 16E7 maybe false negative
  1. 2mgG maybe false negative
  1. NapA maybe false negative
  1. pGP3 maybe false negative
1 ( 20.0% )
1 ( 20.0% )
1 ( 20.0% )
1 ( 20.0% )
1 ( 20.0% )
515408 (100.0%)
ct_pgp3 [integer]
Mean (sd) : 2289.6 (3448.1)
min ≤ med ≤ max:
1 ≤ 281 ≤ 23105
IQR (CV) : 3519 (1.5)
1984 distinct values 511464 (99.2%)
hhv_hsv2_mgg_unique [integer]
Mean (sd) : 161.7 (755.7)
min ≤ med ≤ max:
1 ≤ 7 ≤ 9984
IQR (CV) : 17 (4.7)
452 distinct values 511464 (99.2%)
hhv_cmv_pp_28 [integer]
Mean (sd) : 2796.2 (2083.1)
min ≤ med ≤ max:
4 ≤ 2382 ≤ 15400
IQR (CV) : 2689 (0.7)
2893 distinct values 511464 (99.2%)
hhv_cmv_pp_52 [integer]
Mean (sd) : 7212.3 (3283)
min ≤ med ≤ max:
11 ≤ 7270 ≤ 20224
IQR (CV) : 4457 (0.5)
3376 distinct values 511464 (99.2%)
hhv_cmv_pp150_nter [integer]
Mean (sd) : 4235.2 (3119.9)
min ≤ med ≤ max:
16 ≤ 3522 ≤ 17730
IQR (CV) : 4328 (0.7)
3229 distinct values 511464 (99.2%)
hhv_ebv_ea_d [integer]
Mean (sd) : 2224.2 (2380.3)
min ≤ med ≤ max:
1 ≤ 1451 ≤ 16089
IQR (CV) : 2862 (1.1)
2605 distinct values 511464 (99.2%)
hhv_ebv_ebna_peptid [integer]
Mean (sd) : 8489.6 (3899.4)
min ≤ med ≤ max:
1 ≤ 8794 ≤ 22257
IQR (CV) : 5267 (0.5)
3391 distinct values 511464 (99.2%)
hhv_ebv_vca_p18 [integer]
Mean (sd) : 8948.1 (4087.5)
min ≤ med ≤ max:
1 ≤ 8986 ≤ 23739
IQR (CV) : 5587 (0.5)
3445 distinct values 511464 (99.2%)
hhv_ebv_zebra [integer]
Mean (sd) : 2672.3 (2284.4)
min ≤ med ≤ max:
1 ≤ 2122 ≤ 17846
IQR (CV) : 2926 (0.9)
2870 distinct values 511464 (99.2%)
hhv_hhv6_ie1a [integer]
Mean (sd) : 266.4 (619.5)
min ≤ med ≤ max:
1 ≤ 107 ≤ 15877
IQR (CV) : 162 (2.3)
815 distinct values 511464 (99.2%)
hhv_hhv6_ie1b [integer]
Mean (sd) : 1106.1 (1895)
min ≤ med ≤ max:
1 ≤ 374 ≤ 18891
IQR (CV) : 1049 (1.7)
1777 distinct values 511464 (99.2%)
hhv_hhv7_u14 [integer]
Mean (sd) : 347.9 (403.8)
min ≤ med ≤ max:
11 ≤ 210 ≤ 4145
IQR (CV) : 265 (1.2)
982 distinct values 511464 (99.2%)
hhv_hsv1_gg [integer]
Mean (sd) : 6534 (2798.7)
min ≤ med ≤ max:
1 ≤ 6439 ≤ 20265
IQR (CV) : 3632 (0.4)
3176 distinct values 511464 (99.2%)
hhv_vzv_ge_gi [integer]
Mean (sd) : 1674.4 (1889.2)
min ≤ med ≤ max:
6 ≤ 1023 ≤ 16008
IQR (CV) : 1887 (1.1)
2376 distinct values 511464 (99.2%)
hiv_env [integer]
Mean (sd) : 27.9 (71.7)
min ≤ med ≤ max:
1 ≤ 15 ≤ 1314
IQR (CV) : 16 (2.6)
209 distinct values 511464 (99.2%)
hiv_gag [integer]
Mean (sd) : 124.2 (384.1)
min ≤ med ≤ max:
1 ≤ 40 ≤ 13159
IQR (CV) : 74 (3.1)
527 distinct values 511464 (99.2%)
hp_caga [integer]
Mean (sd) : 11578.2 (9876.4)
min ≤ med ≤ max:
8 ≤ 10187 ≤ 44774
IQR (CV) : 18441 (0.9)
3490 distinct values 511464 (99.2%)
hp_hp10_groel [integer]
Mean (sd) : 2872.7 (3778.4)
min ≤ med ≤ max:
1 ≤ 615 ≤ 17048
IQR (CV) : 5377 (1.3)
2214 distinct values 511464 (99.2%)
hp_hp1098 [integer]
Mean (sd) : 815.3 (1873.8)
min ≤ med ≤ max:
1 ≤ 143 ≤ 17280
IQR (CV) : 532 (2.3)
1337 distinct values 511464 (99.2%)
hp_hp1104_cad [integer]
Mean (sd) : 90.1 (434)
min ≤ med ≤ max:
1 ≤ 10 ≤ 12192
IQR (CV) : 39 (4.8)
446 distinct values 511464 (99.2%)
hp_hp1564_omp [integer]
Mean (sd) : 3236.6 (3903.2)
min ≤ med ≤ max:
1 ≤ 1566 ≤ 24037
IQR (CV) : 5148 (1.2)
2541 distinct values 511464 (99.2%)
hp_hp243_napa [integer]
Mean (sd) : 1472.5 (3309.3)
min ≤ med ≤ max:
1 ≤ 38 ≤ 21231
IQR (CV) : 366 (2.2)
1222 distinct values 511464 (99.2%)
hp_hp305 [integer]
Mean (sd) : 463.6 (1066.2)
min ≤ med ≤ max:
1 ≤ 40 ≤ 10504
IQR (CV) : 353 (2.3)
1143 distinct values 511464 (99.2%)
hp_hp410_hpaa [integer]
Mean (sd) : 132.6 (568.6)
min ≤ med ≤ max:
1 ≤ 9 ≤ 15903
IQR (CV) : 53 (4.3)
564 distinct values 511464 (99.2%)
hp_hp695_hyua_c [integer]
Mean (sd) : 1238.9 (3167.3)
min ≤ med ≤ max:
1 ≤ 7 ≤ 20948
IQR (CV) : 129 (2.6)
1005 distinct values 511464 (99.2%)
hp_hp73_ureasea [integer]
Mean (sd) : 526.7 (1647.6)
min ≤ med ≤ max:
1 ≤ 44 ≤ 20424
IQR (CV) : 201 (3.1)
970 distinct values 511464 (99.2%)
hp_hp875_catalase [integer]
Mean (sd) : 1074.7 (2642.6)
min ≤ med ≤ max:
1 ≤ 72 ≤ 18729
IQR (CV) : 296 (2.5)
1148 distinct values 511464 (99.2%)
hp_vaca [integer]
Mean (sd) : 884.1 (1627.1)
min ≤ med ≤ max:
2 ≤ 266 ≤ 17094
IQR (CV) : 804 (1.8)
1583 distinct values 511464 (99.2%)
hpv_16e6 [integer]
Mean (sd) : 6.5 (74)
min ≤ med ≤ max:
1 ≤ 1 ≤ 2932
IQR (CV) : 0 (11.5)
92 distinct values 511464 (99.2%)
hpv_16e7 [integer]
Mean (sd) : 40.2 (229)
min ≤ med ≤ max:
1 ≤ 1 ≤ 7447
IQR (CV) : 8 (5.7)
300 distinct values 511464 (99.2%)
hpv_16l1 [integer]
Mean (sd) : 33.6 (77.2)
min ≤ med ≤ max:
1 ≤ 18 ≤ 1499
IQR (CV) : 22 (2.3)
239 distinct values 511464 (99.2%)
hpv_18l1 [integer]
Mean (sd) : 38.5 (113.3)
min ≤ med ≤ max:
1 ≤ 15 ≤ 2895
IQR (CV) : 20 (2.9)
279 distinct values 511464 (99.2%)
hpv_bk_vp1 [integer]
Mean (sd) : 4147.2 (3576.2)
min ≤ med ≤ max:
1 ≤ 3287 ≤ 19167
IQR (CV) : 5684 (0.9)
3152 distinct values 511464 (99.2%)
hpv_jc_vp1 [integer]
Mean (sd) : 2388.9 (2494.8)
min ≤ med ≤ max:
1 ≤ 1471 ≤ 15067
IQR (CV) : 4186 (1)
2465 distinct values 511464 (99.2%)
hpv_mcv344_vp1 [integer]
Mean (sd) : 2634.1 (2827.9)
min ≤ med ≤ max:
1 ≤ 1449 ≤ 12831
IQR (CV) : 4717 (1.1)
2402 distinct values 511464 (99.2%)
htlv_env [integer]
Mean (sd) : 11 (11.7)
min ≤ med ≤ max:
1 ≤ 9 ≤ 214
IQR (CV) : 9 (1.1)
86 distinct values 511464 (99.2%)
htlv_gag [integer]
Mean (sd) : 103.7 (173)
min ≤ med ≤ max:
1 ≤ 39 ≤ 4262
IQR (CV) : 138 (1.7)
531 distinct values 511464 (99.2%)
hv_hbv_hbvac [integer]
Mean (sd) : 2731.2 (3867)
min ≤ med ≤ max:
1 ≤ 705 ≤ 21058
IQR (CV) : 4251 (1.4)
2192 distinct values 511464 (99.2%)
hv_hbv_hbvae [integer]
Mean (sd) : 2711.8 (3943.3)
min ≤ med ≤ max:
1 ≤ 711 ≤ 23196
IQR (CV) : 4006 (1.5)
2227 distinct values 511464 (99.2%)
hv_hcv_1acore [integer]
Mean (sd) : 107 (905.5)
min ≤ med ≤ max:
1 ≤ 1 ≤ 17929
IQR (CV) : 15 (8.5)
342 distinct values 511464 (99.2%)
hv_hcv_1ans3 [integer]
Mean (sd) : 84.2 (914.3)
min ≤ med ≤ max:
1 ≤ 14 ≤ 18626
IQR (CV) : 19 (10.9)
158 distinct values 511464 (99.2%)
tg_p22 [integer]
Mean (sd) : 37.1 (159.5)
min ≤ med ≤ max:
1 ≤ 1 ≤ 2955
IQR (CV) : 9 (4.3)
308 distinct values 511464 (99.2%)
tg_sag_1 [integer]
Mean (sd) : 20.3 (42.1)
min ≤ med ≤ max:
1 ≤ 15 ≤ 1695
IQR (CV) : 14 (2.1)
133 distinct values 511464 (99.2%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Gwas

Variable Stats / Values Freqs (% of Valid) Graph Missing
multi_gi_b1_case_cardia [factor]
  1. No
  1. Yes
3534 ( 89.0% )
437 ( 11.0% )
511442 (99.2%)
mult_gi_b1_case_duodenalcancer [factor]
  1. No
  1. Yes
3901 ( 98.2% )
70 ( 1.8% )
511442 (99.2%)
multi_gi_b1_case_duodenalulcer [factor]
  1. No
  1. Yes
3771 ( 95.0% )
200 ( 5.0% )
511442 (99.2%)
multi_gi_b1_case_eac [factor]
  1. No
  1. Yes
3944 ( 99.3% )
27 ( 0.7% )
511442 (99.2%)
multi_gi_b1_case_gastriculcer [factor]
  1. No
  1. Yes
3671 ( 92.4% )
300 ( 7.6% )
511442 (99.2%)
multi_gi_b1_case_noncardia [factor]
  1. No
  1. Yes
3471 ( 87.4% )
500 ( 12.6% )
511442 (99.2%)
multi_gi_b1_case_oesophageal [factor]
  1. No
  1. Yes
3471 ( 87.4% )
500 ( 12.6% )
511442 (99.2%)
multi_gi_b1_reproducibility [factor]
  1. No
  1. Yes
3871 ( 97.5% )
100 ( 2.5% )
511442 (99.2%)
multi_gi_b1_subcohort [factor]
  1. No
  1. Yes
1971 ( 49.6% )
2000 ( 50.4% )
511442 (99.2%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Panel

Variable Stats / Values Freqs (% of Valid) Graph Missing
multi_gi_b1_case_cardia [factor]
  1. No
  1. Yes
3534 ( 89.0% )
437 ( 11.0% )
511442 (99.2%)
mult_gi_b1_case_duodenalcancer [factor]
  1. No
  1. Yes
3901 ( 98.2% )
70 ( 1.8% )
511442 (99.2%)
multi_gi_b1_case_duodenalulcer [factor]
  1. No
  1. Yes
3771 ( 95.0% )
200 ( 5.0% )
511442 (99.2%)
multi_gi_b1_case_eac [factor]
  1. No
  1. Yes
3944 ( 99.3% )
27 ( 0.7% )
511442 (99.2%)
multi_gi_b1_case_gastriculcer [factor]
  1. No
  1. Yes
3671 ( 92.4% )
300 ( 7.6% )
511442 (99.2%)
multi_gi_b1_case_noncardia [factor]
  1. No
  1. Yes
3471 ( 87.4% )
500 ( 12.6% )
511442 (99.2%)
multi_gi_b1_case_oesophageal [factor]
  1. No
  1. Yes
3471 ( 87.4% )
500 ( 12.6% )
511442 (99.2%)
multi_gi_b1_reproducibility [factor]
  1. No
  1. Yes
3871 ( 97.5% )
100 ( 2.5% )
511442 (99.2%)
multi_gi_b1_subcohort [factor]
  1. No
  1. Yes
1971 ( 49.6% )
2000 ( 50.4% )
511442 (99.2%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Resurvey 1

Variable Stats / Values Freqs (% of Valid) Graph Missing
multi_gi_b1_case_cardia [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
mult_gi_b1_case_duodenalcancer [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
multi_gi_b1_case_duodenalulcer [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
multi_gi_b1_case_eac [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
multi_gi_b1_case_gastriculcer [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
multi_gi_b1_case_noncardia [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
multi_gi_b1_case_oesophageal [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
multi_gi_b1_reproducibility [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
multi_gi_b1_subcohort [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Resurvey 1

Variable Stats / Values Freqs (% of Valid) Graph Missing
comments [character]
All NA’s
19803 (100.0%)
ct_pgp3 [integer]
Mean (sd) : 2375.2 (3602.4)
min ≤ med ≤ max:
1 ≤ 195 ≤ 14177
IQR (CV) : 3480 (1.5)
66 distinct values 19704 (99.5%)
hhv_hsv2_mgg_unique [integer]
Mean (sd) : 167 (672.1)
min ≤ med ≤ max:
1 ≤ 6 ≤ 4627
IQR (CV) : 13 (4)
36 distinct values 19704 (99.5%)
hhv_cmv_pp_28 [integer]
Mean (sd) : 2813.9 (2198)
min ≤ med ≤ max:
52 ≤ 2216 ≤ 8050
IQR (CV) : 2771.5 (0.8)
99 distinct values 19704 (99.5%)
hhv_cmv_pp_52 [integer]
Mean (sd) : 7294.8 (3385.6)
min ≤ med ≤ max:
134 ≤ 6996 ≤ 18008
IQR (CV) : 4239 (0.5)
98 distinct values 19704 (99.5%)
hhv_cmv_pp150_nter [integer]
Mean (sd) : 3726 (3029.9)
min ≤ med ≤ max:
121 ≤ 3010 ≤ 16679
IQR (CV) : 3356.5 (0.8)
98 distinct values 19704 (99.5%)
hhv_ebv_ea_d [integer]
Mean (sd) : 2081.5 (2184.5)
min ≤ med ≤ max:
1 ≤ 1478 ≤ 7848
IQR (CV) : 2113 (1)
96 distinct values 19704 (99.5%)
hhv_ebv_ebna_peptid [integer]
Mean (sd) : 7670.8 (4053.1)
min ≤ med ≤ max:
8 ≤ 8554 ≤ 14600
IQR (CV) : 5859.5 (0.5)
99 distinct values 19704 (99.5%)
hhv_ebv_vca_p18 [integer]
Mean (sd) : 8429.8 (4223.2)
min ≤ med ≤ max:
107 ≤ 8668 ≤ 18773
IQR (CV) : 6080.5 (0.5)
99 distinct values 19704 (99.5%)
hhv_ebv_zebra [integer]
Mean (sd) : 2581.7 (2130.8)
min ≤ med ≤ max:
1 ≤ 1956 ≤ 8396
IQR (CV) : 2860.5 (0.8)
99 distinct values 19704 (99.5%)
hhv_hhv6_ie1a [integer]
Mean (sd) : 185.5 (256.6)
min ≤ med ≤ max:
22 ≤ 103 ≤ 1448
IQR (CV) : 116 (1.4)
79 distinct values 19704 (99.5%)
hhv_hhv6_ie1b [integer]
Mean (sd) : 1233.2 (1947.9)
min ≤ med ≤ max:
16 ≤ 464 ≤ 9101
IQR (CV) : 1132 (1.6)
96 distinct values 19704 (99.5%)
hhv_hhv7_u14 [integer]
Mean (sd) : 334.3 (377.4)
min ≤ med ≤ max:
29 ≤ 189 ≤ 2141
IQR (CV) : 233 (1.1)
90 distinct values 19704 (99.5%)
hhv_hsv1_gg [integer]
Mean (sd) : 6375.8 (2920.5)
min ≤ med ≤ max:
15 ≤ 6304 ≤ 13842
IQR (CV) : 3735 (0.5)
99 distinct values 19704 (99.5%)
hhv_vzv_ge_gi [integer]
Mean (sd) : 1571 (1821.1)
min ≤ med ≤ max:
5 ≤ 812 ≤ 8176
IQR (CV) : 1561.5 (1.2)
97 distinct values 19704 (99.5%)
hiv_env [integer]
Mean (sd) : 21.7 (28.5)
min ≤ med ≤ max:
1 ≤ 14 ≤ 210
IQR (CV) : 17.5 (1.3)
42 distinct values 19704 (99.5%)
hiv_gag [integer]
Mean (sd) : 109 (293.6)
min ≤ med ≤ max:
1 ≤ 37 ≤ 2532
IQR (CV) : 67.5 (2.7)
72 distinct values 19704 (99.5%)
hp_caga [integer]
Mean (sd) : 8351.9 (10318.8)
min ≤ med ≤ max:
6 ≤ 2931 ≤ 38198
IQR (CV) : 14801 (1.2)
98 distinct values 19704 (99.5%)
hp_hp10_groel [integer]
Mean (sd) : 2105.6 (3503)
min ≤ med ≤ max:
1 ≤ 138 ≤ 12870
IQR (CV) : 2172.5 (1.7)
78 distinct values 19704 (99.5%)
hp_hp1098 [integer]
Mean (sd) : 581.4 (1621.7)
min ≤ med ≤ max:
1 ≤ 41 ≤ 10470
IQR (CV) : 254.5 (2.8)
74 distinct values 19704 (99.5%)
hp_hp1104_cad [integer]
Mean (sd) : 129 (567.7)
min ≤ med ≤ max:
1 ≤ 7 ≤ 5079
IQR (CV) : 29 (4.4)
44 distinct values 19704 (99.5%)
hp_hp1564_omp [integer]
Mean (sd) : 2133.3 (3183.4)
min ≤ med ≤ max:
1 ≤ 295 ≤ 11985
IQR (CV) : 3434.5 (1.5)
79 distinct values 19704 (99.5%)
hp_hp243_napa [integer]
Mean (sd) : 1090.2 (2982.1)
min ≤ med ≤ max:
1 ≤ 30 ≤ 14201
IQR (CV) : 91 (2.7)
67 distinct values 19704 (99.5%)
hp_hp305 [integer]
Mean (sd) : 400.1 (1090)
min ≤ med ≤ max:
1 ≤ 14 ≤ 7213
IQR (CV) : 106.5 (2.7)
57 distinct values 19704 (99.5%)
hp_hp410_hpaa [integer]
Mean (sd) : 159.1 (595.3)
min ≤ med ≤ max:
1 ≤ 9 ≤ 4841
IQR (CV) : 49 (3.7)
48 distinct values 19704 (99.5%)
hp_hp695_hyua_c [integer]
Mean (sd) : 609.5 (2172.9)
min ≤ med ≤ max:
1 ≤ 6 ≤ 11391
IQR (CV) : 50 (3.6)
47 distinct values 19704 (99.5%)
hp_hp73_ureasea [integer]
Mean (sd) : 347 (856.5)
min ≤ med ≤ max:
1 ≤ 46 ≤ 5358
IQR (CV) : 208 (2.5)
70 distinct values 19704 (99.5%)
hp_hp875_catalase [integer]
Mean (sd) : 942.2 (2523)
min ≤ med ≤ max:
1 ≤ 59 ≤ 15275
IQR (CV) : 270 (2.7)
80 distinct values 19704 (99.5%)
hp_vaca [integer]
Mean (sd) : 673.9 (1319.2)
min ≤ med ≤ max:
4 ≤ 123 ≤ 7353
IQR (CV) : 419.5 (2)
93 distinct values 19704 (99.5%)
hpv_16e6 [integer]
Mean (sd) : 3.5 (10.8)
min ≤ med ≤ max:
1 ≤ 1 ≤ 71
IQR (CV) : 0 (3.1)
1 : 87 ( 87.9% )
3 : 2 ( 2.0% )
4 : 3 ( 3.0% )
7 : 1 ( 1.0% )
9 : 2 ( 2.0% )
41 : 1 ( 1.0% )
51 : 1 ( 1.0% )
54 : 1 ( 1.0% )
71 : 1 ( 1.0% )
19704 (99.5%)
hpv_16e7 [integer]
Mean (sd) : 36.4 (157.3)
min ≤ med ≤ max:
1 ≤ 1 ≤ 1426
IQR (CV) : 8 (4.3)
29 distinct values 19704 (99.5%)
hpv_16l1 [integer]
Mean (sd) : 26.4 (34.1)
min ≤ med ≤ max:
1 ≤ 16 ≤ 196
IQR (CV) : 21.5 (1.3)
48 distinct values 19704 (99.5%)
hpv_18l1 [integer]
Mean (sd) : 27.4 (41.7)
min ≤ med ≤ max:
1 ≤ 14 ≤ 252
IQR (CV) : 19 (1.5)
49 distinct values 19704 (99.5%)
hpv_bk_vp1 [integer]
Mean (sd) : 3856 (3483.8)
min ≤ med ≤ max:
23 ≤ 2981 ≤ 13571
IQR (CV) : 5796 (0.9)
98 distinct values 19704 (99.5%)
hpv_jc_vp1 [integer]
Mean (sd) : 1975.3 (2247.2)
min ≤ med ≤ max:
1 ≤ 1357 ≤ 7908
IQR (CV) : 2856 (1.1)
96 distinct values 19704 (99.5%)
hpv_mcv344_vp1 [integer]
Mean (sd) : 2592.2 (2862.1)
min ≤ med ≤ max:
1 ≤ 1468 ≤ 9890
IQR (CV) : 4561.5 (1.1)
97 distinct values 19704 (99.5%)
htlv_env [integer]
Mean (sd) : 9.9 (7.9)
min ≤ med ≤ max:
1 ≤ 9 ≤ 43
IQR (CV) : 9 (0.8)
25 distinct values 19704 (99.5%)
htlv_gag [integer]
Mean (sd) : 110.8 (246.2)
min ≤ med ≤ max:
1 ≤ 31 ≤ 2116
IQR (CV) : 120 (2.2)
61 distinct values 19704 (99.5%)
hv_hbv_hbvac [integer]
Mean (sd) : 2457.9 (3984.2)
min ≤ med ≤ max:
1 ≤ 462 ≤ 19827
IQR (CV) : 4103 (1.6)
62 distinct values 19704 (99.5%)
hv_hbv_hbvae [integer]
Mean (sd) : 2438.6 (4009.1)
min ≤ med ≤ max:
2 ≤ 416 ≤ 21215
IQR (CV) : 3693.5 (1.6)
88 distinct values 19704 (99.5%)
hv_hcv_1acore [integer]
Mean (sd) : 17.9 (41.3)
min ≤ med ≤ max:
1 ≤ 1 ≤ 304
IQR (CV) : 9.5 (2.3)
29 distinct values 19704 (99.5%)
hv_hcv_1ans3 [integer]
Mean (sd) : 17.4 (16.5)
min ≤ med ≤ max:
1 ≤ 12 ≤ 90
IQR (CV) : 17 (0.9)
40 distinct values 19704 (99.5%)
tg_p22 [integer]
Mean (sd) : 29.3 (92.4)
min ≤ med ≤ max:
1 ≤ 2 ≤ 704
IQR (CV) : 8 (3.2)
32 distinct values 19704 (99.5%)
tg_sag_1 [integer]
Mean (sd) : 22.2 (49.9)
min ≤ med ≤ max:
1 ≤ 15 ≤ 495
IQR (CV) : 13 (2.2)
39 distinct values 19704 (99.5%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Resurvey 2

Variable Stats / Values Freqs (% of Valid) Graph Missing
multi_gi_b1_case_cardia [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
mult_gi_b1_case_duodenalcancer [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
multi_gi_b1_case_duodenalulcer [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
multi_gi_b1_case_eac [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
multi_gi_b1_case_gastriculcer [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
multi_gi_b1_case_noncardia [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
multi_gi_b1_case_oesophageal [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
multi_gi_b1_reproducibility [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
multi_gi_b1_subcohort [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Resurvey 2

Variable Stats / Values Freqs (% of Valid) Graph Missing
comments [character]
All NA’s
25252 (100.0%)
ct_pgp3 [integer]
Mean (sd) : 2355.1 (3512.8)
min ≤ med ≤ max:
1 ≤ 377 ≤ 14765
IQR (CV) : 2920.5 (1.5)
71 distinct values 25152 (99.6%)
hhv_hsv2_mgg_unique [integer]
Mean (sd) : 243.2 (932.6)
min ≤ med ≤ max:
1 ≤ 6 ≤ 5565
IQR (CV) : 14 (3.8)
35 distinct values 25152 (99.6%)
hhv_cmv_pp_28 [integer]
Mean (sd) : 2863 (2147.8)
min ≤ med ≤ max:
44 ≤ 2385 ≤ 12522
IQR (CV) : 2679.5 (0.8)
100 distinct values 25152 (99.6%)
hhv_cmv_pp_52 [integer]
Mean (sd) : 7673.7 (2924.9)
min ≤ med ≤ max:
71 ≤ 7500.5 ≤ 13123
IQR (CV) : 3941.8 (0.4)
98 distinct values 25152 (99.6%)
hhv_cmv_pp150_nter [integer]
Mean (sd) : 4055 (2997.1)
min ≤ med ≤ max:
48 ≤ 3624.5 ≤ 13328
IQR (CV) : 3922.8 (0.7)
100 distinct values 25152 (99.6%)
hhv_ebv_ea_d [integer]
Mean (sd) : 2590.2 (2596.4)
min ≤ med ≤ max:
1 ≤ 1680 ≤ 10655
IQR (CV) : 3368.8 (1)
99 distinct values 25152 (99.6%)
hhv_ebv_ebna_peptid [integer]
Mean (sd) : 7992.8 (4294.6)
min ≤ med ≤ max:
19 ≤ 8192 ≤ 19452
IQR (CV) : 5867.5 (0.5)
99 distinct values 25152 (99.6%)
hhv_ebv_vca_p18 [integer]
Mean (sd) : 8798.9 (3889.7)
min ≤ med ≤ max:
30 ≤ 8842 ≤ 20441
IQR (CV) : 4791.8 (0.4)
99 distinct values 25152 (99.6%)
hhv_ebv_zebra [integer]
Mean (sd) : 3013.9 (2337.5)
min ≤ med ≤ max:
2 ≤ 2470.5 ≤ 11312
IQR (CV) : 2926.5 (0.8)
100 distinct values 25152 (99.6%)
hhv_hhv6_ie1a [integer]
Mean (sd) : 209 (212.8)
min ≤ med ≤ max:
13 ≤ 136.5 ≤ 1167
IQR (CV) : 164 (1)
89 distinct values 25152 (99.6%)
hhv_hhv6_ie1b [integer]
Mean (sd) : 1249.4 (1960.2)
min ≤ med ≤ max:
25 ≤ 345.5 ≤ 8443
IQR (CV) : 1120 (1.6)
96 distinct values 25152 (99.6%)
hhv_hhv7_u14 [integer]
Mean (sd) : 345.9 (319.1)
min ≤ med ≤ max:
55 ≤ 234.5 ≤ 2238
IQR (CV) : 254.8 (0.9)
95 distinct values 25152 (99.6%)
hhv_hsv1_gg [integer]
Mean (sd) : 6610.8 (2778.8)
min ≤ med ≤ max:
14 ≤ 6771 ≤ 12900
IQR (CV) : 3493.5 (0.4)
100 distinct values 25152 (99.6%)
hhv_vzv_ge_gi [integer]
Mean (sd) : 1859.5 (2074.6)
min ≤ med ≤ max:
23 ≤ 961.5 ≤ 11029
IQR (CV) : 2401 (1.1)
99 distinct values 25152 (99.6%)
hiv_env [integer]
Mean (sd) : 21.4 (27.2)
min ≤ med ≤ max:
1 ≤ 14 ≤ 181
IQR (CV) : 17 (1.3)
39 distinct values 25152 (99.6%)
hiv_gag [integer]
Mean (sd) : 110.1 (247.6)
min ≤ med ≤ max:
1 ≤ 44 ≤ 1821
IQR (CV) : 55 (2.2)
70 distinct values 25152 (99.6%)
hp_caga [integer]
Mean (sd) : 7788.9 (9792.4)
min ≤ med ≤ max:
14 ≤ 2532 ≤ 34792
IQR (CV) : 13053 (1.3)
99 distinct values 25152 (99.6%)
hp_hp10_groel [integer]
Mean (sd) : 2297 (3767.6)
min ≤ med ≤ max:
1 ≤ 129.5 ≤ 16826
IQR (CV) : 3767.8 (1.6)
78 distinct values 25152 (99.6%)
hp_hp1098 [integer]
Mean (sd) : 593.4 (1606.5)
min ≤ med ≤ max:
5 ≤ 38.5 ≤ 9276
IQR (CV) : 254.2 (2.7)
76 distinct values 25152 (99.6%)
hp_hp1104_cad [integer]
Mean (sd) : 136.2 (657.8)
min ≤ med ≤ max:
1 ≤ 10 ≤ 6261
IQR (CV) : 41 (4.8)
51 distinct values 25152 (99.6%)
hp_hp1564_omp [integer]
Mean (sd) : 2164.2 (3285.8)
min ≤ med ≤ max:
1 ≤ 223 ≤ 14544
IQR (CV) : 3794.2 (1.5)
86 distinct values 25152 (99.6%)
hp_hp243_napa [integer]
Mean (sd) : 1296.5 (3481.5)
min ≤ med ≤ max:
1 ≤ 34 ≤ 22662
IQR (CV) : 143.5 (2.7)
70 distinct values 25152 (99.6%)
hp_hp305 [integer]
Mean (sd) : 349 (933)
min ≤ med ≤ max:
1 ≤ 12.5 ≤ 5766
IQR (CV) : 74.2 (2.7)
51 distinct values 25152 (99.6%)
hp_hp410_hpaa [integer]
Mean (sd) : 148 (450)
min ≤ med ≤ max:
1 ≤ 11 ≤ 3278
IQR (CV) : 62.5 (3)
49 distinct values 25152 (99.6%)
hp_hp695_hyua_c [integer]
Mean (sd) : 878.3 (2829.2)
min ≤ med ≤ max:
1 ≤ 4 ≤ 14960
IQR (CV) : 48.2 (3.2)
45 distinct values 25152 (99.6%)
hp_hp73_ureasea [integer]
Mean (sd) : 327 (735.8)
min ≤ med ≤ max:
1 ≤ 35.5 ≤ 4388
IQR (CV) : 239.2 (2.3)
68 distinct values 25152 (99.6%)
hp_hp875_catalase [integer]
Mean (sd) : 1114.5 (3084.2)
min ≤ med ≤ max:
1 ≤ 60.5 ≤ 18658
IQR (CV) : 305.2 (2.8)
76 distinct values 25152 (99.6%)
hp_vaca [integer]
Mean (sd) : 634.7 (1127.3)
min ≤ med ≤ max:
4 ≤ 123 ≤ 5280
IQR (CV) : 546.2 (1.8)
88 distinct values 25152 (99.6%)
hpv_16e6 [integer]
Mean (sd) : 3.4 (8.9)
min ≤ med ≤ max:
1 ≤ 1 ≤ 71
IQR (CV) : 0 (2.6)
11 distinct values 25152 (99.6%)
hpv_16e7 [integer]
Mean (sd) : 86.6 (606.4)
min ≤ med ≤ max:
1 ≤ 1 ≤ 6004
IQR (CV) : 8 (7)
31 distinct values 25152 (99.6%)
hpv_16l1 [integer]
Mean (sd) : 25.2 (23.2)
min ≤ med ≤ max:
1 ≤ 20 ≤ 138
IQR (CV) : 21.5 (0.9)
46 distinct values 25152 (99.6%)
hpv_18l1 [integer]
Mean (sd) : 27.8 (40.1)
min ≤ med ≤ max:
1 ≤ 16 ≤ 267
IQR (CV) : 23 (1.4)
45 distinct values 25152 (99.6%)
hpv_bk_vp1 [integer]
Mean (sd) : 3885.3 (3624)
min ≤ med ≤ max:
18 ≤ 3044.5 ≤ 15361
IQR (CV) : 5085.2 (0.9)
100 distinct values 25152 (99.6%)
hpv_jc_vp1 [integer]
Mean (sd) : 2144.2 (2214.3)
min ≤ med ≤ max:
1 ≤ 1403.5 ≤ 7452
IQR (CV) : 3620.8 (1)
99 distinct values 25152 (99.6%)
hpv_mcv344_vp1 [integer]
Mean (sd) : 2636 (2824.2)
min ≤ med ≤ max:
1 ≤ 1565 ≤ 9812
IQR (CV) : 4731.2 (1.1)
95 distinct values 25152 (99.6%)
htlv_env [integer]
Mean (sd) : 10.9 (8.3)
min ≤ med ≤ max:
1 ≤ 10 ≤ 39
IQR (CV) : 10.5 (0.8)
27 distinct values 25152 (99.6%)
htlv_gag [integer]
Mean (sd) : 115.8 (191.5)
min ≤ med ≤ max:
1 ≤ 29.5 ≤ 1332
IQR (CV) : 156 (1.7)
62 distinct values 25152 (99.6%)
hv_hbv_hbvac [integer]
Mean (sd) : 2206.2 (3328.7)
min ≤ med ≤ max:
1 ≤ 483 ≤ 12771
IQR (CV) : 3580.5 (1.5)
63 distinct values 25152 (99.6%)
hv_hbv_hbvae [integer]
Mean (sd) : 2192.8 (3337.3)
min ≤ med ≤ max:
1 ≤ 494 ≤ 13385
IQR (CV) : 3329.8 (1.5)
89 distinct values 25152 (99.6%)
hv_hcv_1acore [integer]
Mean (sd) : 21 (52.4)
min ≤ med ≤ max:
1 ≤ 1 ≤ 401
IQR (CV) : 15 (2.5)
32 distinct values 25152 (99.6%)
hv_hcv_1ans3 [integer]
Mean (sd) : 18 (14.9)
min ≤ med ≤ max:
1 ≤ 15 ≤ 80
IQR (CV) : 15.2 (0.8)
35 distinct values 25152 (99.6%)
tg_p22 [integer]
Mean (sd) : 24.6 (57.7)
min ≤ med ≤ max:
1 ≤ 3 ≤ 362
IQR (CV) : 9.2 (2.3)
33 distinct values 25152 (99.6%)
tg_sag_1 [integer]
Mean (sd) : 20.8 (22.9)
min ≤ med ≤ max:
1 ≤ 17.5 ≤ 193
IQR (CV) : 14.5 (1.1)
40 distinct values 25152 (99.6%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27




International Coordinating Centre, China Kadoorie Biobank (CKB), CTSU, Nuffield Department of Population Health, University of Oxford Old Road Campus, Headington, Oxford, OX3 7LF

Tel: +44 (0)1865 743743 | Fax: +44 (0)1865 743985 | Email:

Copyright China Kadoorie Biobank (CKB), University of Oxford, (2024)

Page generated: 27-02-2024