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Section

GWAS.Linkage

Data summary

Baseline

Variable Stats / Values Freqs (% of Valid) Graph Missing
gwas_b1_case_copdexacerbation [factor]
  1. No
  1. Yes
95502 ( 94.8% )
5204 ( 5.2% )
414707 (80.5%)
gwas_b1_case_fihd [factor]
  1. No
  1. Yes
99838 ( 99.1% )
868 ( 0.9% )
414707 (80.5%)
gwas_b1_case_ich [factor]
  1. No
  1. Yes
95258 ( 94.6% )
5448 ( 5.4% )
414707 (80.5%)
gwas_b1_case_is [factor]
  1. No
  1. Yes
95306 ( 94.6% )
5400 ( 5.4% )
414707 (80.5%)
gwas_b1_case_mi [factor]
  1. No
  1. Yes
98828 ( 98.1% )
1878 ( 1.9% )
414707 (80.5%)
gwas_b1_case_sah [factor]
  1. No
  1. Yes
100232 ( 99.5% )
474 ( 0.5% )
414707 (80.5%)
gwas_b1_control_ich [factor]
  1. No
  1. Yes
90847 ( 90.2% )
9859 ( 9.8% )
414707 (80.5%)
gwas_b1_resurvey2 [factor]
  1. No
  1. Yes
95981 ( 95.3% )
4725 ( 4.7% )
414707 (80.5%)
gwas_b1_unselected [factor]
  1. No
  1. Yes
33856 ( 33.6% )
66850 ( 66.4% )
414707 (80.5%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Gwas

Variable Stats / Values Freqs (% of Valid) Graph Missing
gwas_b1_case_copdexacerbation [factor]
  1. No
  1. Yes
95502 ( 94.8% )
5204 ( 5.2% )
414707 (80.5%)
gwas_b1_case_fihd [factor]
  1. No
  1. Yes
99838 ( 99.1% )
868 ( 0.9% )
414707 (80.5%)
gwas_b1_case_ich [factor]
  1. No
  1. Yes
95258 ( 94.6% )
5448 ( 5.4% )
414707 (80.5%)
gwas_b1_case_is [factor]
  1. No
  1. Yes
95306 ( 94.6% )
5400 ( 5.4% )
414707 (80.5%)
gwas_b1_case_mi [factor]
  1. No
  1. Yes
98828 ( 98.1% )
1878 ( 1.9% )
414707 (80.5%)
gwas_b1_case_sah [factor]
  1. No
  1. Yes
100232 ( 99.5% )
474 ( 0.5% )
414707 (80.5%)
gwas_b1_control_ich [factor]
  1. No
  1. Yes
90847 ( 90.2% )
9859 ( 9.8% )
414707 (80.5%)
gwas_b1_resurvey2 [factor]
  1. No
  1. Yes
95981 ( 95.3% )
4725 ( 4.7% )
414707 (80.5%)
gwas_b1_unselected [factor]
  1. No
  1. Yes
33856 ( 33.6% )
66850 ( 66.4% )
414707 (80.5%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Gwas

Variable Stats / Values Freqs (% of Valid) Graph Missing
gwas_batch [character]
  1. A 
    ·
  1. N 
    ·
  1. Q 
    ·
  1. P 
    ·
  1. T 
    ·
  1. J 
    ·
  1. O 
    ·
  1. R 
    ·
  1. H 
    ·
  1. C 
    ·
[ 12 others ]
4685 ( 4.7% )
4681 ( 4.6% )
4679 ( 4.6% )
4676 ( 4.6% )
4669 ( 4.6% )
4666 ( 4.6% )
4663 ( 4.6% )
4663 ( 4.6% )
4661 ( 4.6% )
4659 ( 4.6% )
54004 ( 53.6% )
414707 (80.5%)
ccvid_version [integer] 1 distinct value
1 : 100706 ( 100.0% )
414707 (80.5%)
is_in_gwas_unrelated_subset [integer]
Min : 0
Mean : 0.8
Max : 1
0 : 23996 ( 23.8% )
1 : 76710 ( 76.2% )
414707 (80.5%)
is_in_gwas_population_subset [integer]
Min : 0
Mean : 0.8
Max : 1
0 : 23530 ( 23.4% )
1 : 77176 ( 76.6% )
414707 (80.5%)
principal_components_source [factor]
  1. Directly derived from par
  1. Average of sampled partic
100706 ( 20.5% )
390082 ( 79.5% )
24625 (4.8%)
national_pc01 [numeric]
Mean (sd) : 0 (0.1)
min ≤ med ≤ max:
-0.2 ≤ 0 ≤ 0.1
IQR (CV) : 0.1 (-20.2)
101321 distinct values 24625 (4.8%)
national_pc02 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
-0.1 ≤ 0 ≤ 0
IQR (CV) : 0 (28.1)
101726 distinct values 24625 (4.8%)
national_pc03 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0.1
IQR (CV) : 0 (21.7)
101676 distinct values 24625 (4.8%)
national_pc04 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0
IQR (CV) : 0 (42.6)
101673 distinct values 24625 (4.8%)
national_pc05 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0
IQR (CV) : 0 (-7.1)
101677 distinct values 24625 (4.8%)
national_pc06 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0
IQR (CV) : 0 (-10)
101603 distinct values 24625 (4.8%)
national_pc07 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0.1
IQR (CV) : 0 (14)
101664 distinct values 24625 (4.8%)
national_pc08 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0.1
IQR (CV) : 0 (-9.4)
101580 distinct values 24625 (4.8%)
national_pc09 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0.1
IQR (CV) : 0 (-22.6)
101547 distinct values 24625 (4.8%)
national_pc10 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0
IQR (CV) : 0 (21.3)
101521 distinct values 24625 (4.8%)
national_pc11 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0
IQR (CV) : 0 (31.1)
101515 distinct values 24625 (4.8%)
regional_pc01 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
0 ≤ 0 ≤ 0
IQR (CV) : 0 (-10)
93191 distinct values 30407 (5.9%)
regional_pc02 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
-0.1 ≤ 0 ≤ 0.1
IQR (CV) : 0 (-16.7)
93783 distinct values 30407 (5.9%)
regional_pc03 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
-0.1 ≤ 0 ≤ 0.1
IQR (CV) : 0 (10.8)
81705 distinct values 80154 (15.6%)
regional_pc04 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
-0.1 ≤ 0 ≤ 0.1
IQR (CV) : 0 (-34.9)
74030 distinct values 105509 (20.5%)
regional_pc05 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
-0.1 ≤ 0 ≤ 0.1
IQR (CV) : 0 (43.3)
67630 distinct values 150566 (29.2%)
regional_pc06 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
-0.1 ≤ 0 ≤ 0.1
IQR (CV) : 0 (-42.2)
51062 distinct values 236478 (45.9%)
regional_pc07 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
-0.1 ≤ 0 ≤ 0.1
IQR (CV) : 0 (-41.9)
40556 distinct values 291661 (56.6%)
regional_pc08 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
-0.1 ≤ 0 ≤ 0.1
IQR (CV) : 0 (12635.8)
40579 distinct values 291661 (56.6%)
regional_pc09 [numeric]
Mean (sd) : 0 (0)
min ≤ med ≤ max:
-0.1 ≤ 0 ≤ 0.1
IQR (CV) : 0 (284.8)
19395 distinct values 403733 (78.3%)
is_immigrant [factor]
  1. No
  1. Yes
94924 ( 94.3% )
5782 ( 5.7% )
414707 (80.5%)
gwas_array_type [character]
  1. Axiom CKB1
  1. Axiom CKB2
32265 ( 32.0% )
68441 ( 68.0% )
414707 (80.5%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Panel

Variable Stats / Values Freqs (% of Valid) Graph Missing
gwas_b1_case_copdexacerbation [factor]
  1. No
  1. Yes
95502 ( 94.8% )
5204 ( 5.2% )
414707 (80.5%)
gwas_b1_case_fihd [factor]
  1. No
  1. Yes
99838 ( 99.1% )
868 ( 0.9% )
414707 (80.5%)
gwas_b1_case_ich [factor]
  1. No
  1. Yes
95258 ( 94.6% )
5448 ( 5.4% )
414707 (80.5%)
gwas_b1_case_is [factor]
  1. No
  1. Yes
95306 ( 94.6% )
5400 ( 5.4% )
414707 (80.5%)
gwas_b1_case_mi [factor]
  1. No
  1. Yes
98828 ( 98.1% )
1878 ( 1.9% )
414707 (80.5%)
gwas_b1_case_sah [factor]
  1. No
  1. Yes
100232 ( 99.5% )
474 ( 0.5% )
414707 (80.5%)
gwas_b1_control_ich [factor]
  1. No
  1. Yes
90847 ( 90.2% )
9859 ( 9.8% )
414707 (80.5%)
gwas_b1_resurvey2 [factor]
  1. No
  1. Yes
95981 ( 95.3% )
4725 ( 4.7% )
414707 (80.5%)
gwas_b1_unselected [factor]
  1. No
  1. Yes
33856 ( 33.6% )
66850 ( 66.4% )
414707 (80.5%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Panel

Variable Stats / Values Freqs (% of Valid) Graph Missing
panel_genotyping_batch [character]
  1. 3b_1
  1. 3b_2
  1. 3b_4
  1. 3b_3
  1. 3a_3
  1. 3a_4
  1. 3a_1
  1. 3a_2
  1. 1_1
  1. 1_3
[ 6 others ]
11918 ( 12.8% )
11899 ( 12.8% )
11742 ( 12.6% )
11740 ( 12.6% )
7050 ( 7.6% )
7018 ( 7.5% )
6980 ( 7.5% )
6911 ( 7.4% )
2268 ( 2.4% )
2265 ( 2.4% )
13452 ( 14.4% )
422170 (81.9%)
panel_population_subset [factor]
  1. No
  1. Yes
All NA’s 515413 (100.0%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Resurvey 1

Variable Stats / Values Freqs (% of Valid) Graph Missing
gwas_b1_case_copdexacerbation [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
gwas_b1_case_fihd [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
gwas_b1_case_ich [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
gwas_b1_case_is [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
gwas_b1_case_mi [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
gwas_b1_case_sah [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
gwas_b1_control_ich [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
gwas_b1_resurvey2 [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)
gwas_b1_unselected [factor]
  1. No
  1. Yes
All NA’s 19803 (100.0%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27

Resurvey 2

Variable Stats / Values Freqs (% of Valid) Graph Missing
gwas_b1_case_copdexacerbation [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
gwas_b1_case_fihd [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
gwas_b1_case_ich [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
gwas_b1_case_is [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
gwas_b1_case_mi [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
gwas_b1_case_sah [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
gwas_b1_control_ich [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
gwas_b1_resurvey2 [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)
gwas_b1_unselected [factor]
  1. No
  1. Yes
All NA’s 25252 (100.0%)

Generated by summarytools 1.0.1 (R version 4.3.1)
2024-02-27




International Coordinating Centre, China Kadoorie Biobank (CKB), CTSU, Nuffield Department of Population Health, University of Oxford Old Road Campus, Headington, Oxford, OX3 7LF

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Copyright China Kadoorie Biobank (CKB), University of Oxford, (2024)

Page generated: 27-02-2024