• Data summary
combined_dep_and_ckb_logo

Data summary

  • NB These endpoint frequencies are generated using the following type of follow up data:
    • du, da, dis, hiip, hiop, oda, odu, oinc
ICD10_code
Description
any_resurvey
all_resurveys
are_female
are_male
gwas
olink_immuno_oncology_panel
metabolon_metabolomics
clinical_biochemistry
nightingale_nmr_metabolomics
olink_explore_panel
A00
Cholera
0
0
2
2
2
1
0
0
1
0
A01
Typhoid and paratyphoid fevers
11
2
40
53
28
0
0
4
0
3
A02
Other salmonella infections
0
0
0
2
1
0
0
0
0
0
A03
Shigellosis
6
3
53
32
21
0
0
5
0
0
A04
Other bacterial intestinal infections
3
2
34
9
6
0
0
1
0
2
A05
Other bacterial foodborne intoxications, not elsewhere classified
0
0
1
3
1
0
0
0
0
0
A06
Amoebiasis
1
1
9
8
2
0
0
1
0
0
A07
Other protozoal intestinal diseases
0
0
2
2
1
0
0
1
0
0
A08
Viral and other specified intestinal infections
1
0
15
8
3
0
0
2
1
0
A09
Other gastroenteritis and colitis of infectious and unspecified origin
842
452
9073
4857
2703
46
30
508
228
90
1–10 of 1531 rows
of 154
ICD10_code
Description
any_resurvey
all_resurveys
are_female
are_male
gwas
olink_immuno_oncology_panel
metabolon_metabolomics
clinical_biochemistry
nightingale_nmr_metabolomics
olink_explore_panel
A00.9
Cholera, unspecified
0
0
2
2
2
1
0
0
1
0
A01.0
Typhoid fever
11
2
40
53
28
0
0
4
0
3
A01.4
Paratyphoid fever, unspecified
0
0
1
0
0
0
0
0
0
0
A02.0
Salmonella enteritis
0
0
0
2
1
0
0
0
0
0
A03.0
Shigellosis due to Shigella dysenteriae
0
0
0
1
0
0
0
0
0
0
A03.9
Shigellosis, unspecified
6
3
53
31
21
0
0
5
0
0
A04.4
Other intestinal Escherichia coli infections
0
0
1
1
0
0
0
0
0
0
A04.7
Enterocolitis due to Clostridium difficile
3
2
21
4
3
0
0
0
0
0
A04.9
Bacterial intestinal infection, unspecified
0
0
12
4
3
0
0
1
0
2
A05.2
Foodborne Clostridium perfringens [Clostridium welchii] intoxication
0
0
0
2
0
0
0
0
0
0
1–10 of 5298 rows
of 530
CKB_endpoint
Description
any_resurvey
all_resurveys
are_female
are_male
gwas
olink_immuno_oncology_panel
metabolon_metabolomics
clinical_biochemistry
nightingale_nmr_metabolomics
olink_explore_panel
1
Any incident (all events)
21411
10637
218528
147726
76908
1204
331
16663
6373
3318
2
Vascular disease (ICD-10: I00-I99)
9916
4866
99260
71135
43632
437
161
13798
4339
2545
3
Ischaemic heart disease (ICD-10: I20-I25)
3633
1746
35225
24663
16260
154
65
4171
1622
2147
4
Acute myocardial infarction (ICD-10: I21)
491
211
4085
5303
3679
23
7
1397
977
1545
5
Other ischaemic heart disease (endpoint 0003 but not 0004)
3489
1684
33945
22846
14967
148
65
3628
1223
1608
6
Cerebrovascular disease (ICD-10: I60-I69)
5463
2654
54914
39993
26075
215
69
11230
2862
778
7
Subarachnoid stroke (ICD-10: I60)
64
31
694
431
611
3
2
232
24
14
8
Haemorrhagic stroke (ICD-10: I61)
652
245
5962
6770
6808
17
3
5012
1178
53
9
Ischaemic stroke (ICD-10: I63)
3411
1692
31633
25506
15582
146
38
6585
1677
533
10
Other or unspecified stroke type (ICD-10: I64)
269
132
2255
2002
1223
8
0
446
102
41
1–10 of 183 rows
of 19
  • Phecodes are built using the dis, da, hiip endpoint sources
Phecodes v1.2 (parents)
Description
notes
any_resurvey
all_resurveys
are_female
are_male
gwas
olink_immuno_oncology_panel
metabolon_metabolomics
clinical_biochemistry
nightingale_nmr_metabolomics
olink_explore_panel
8
Intestinal infection
Exclusions: 001-009.99
14
7
113
71
37
1
0
9
1
2
10
Tuberculosis
Exclusions: 010-041.99
187
78
1276
1862
779
7
2
148
54
32
31
Diseases due to other mycobacteria
Exclusions: 010-041.99
0
0
1
0
0
0
0
0
0
0
38
Septicemia
Exclusions: 010-041.99
34
14
268
202
115
1
1
25
8
9
41
Bacterial infection NOS
Exclusions: 010-041.99
13
6
122
95
44
0
0
10
5
2
53
Herpes zoster
Exclusions: 050-079.99
187
85
1779
1160
620
7
5
113
35
29
54
Herpes simplex
Exclusions: 050-079.99
5
5
61
52
26
0
0
4
2
0
70
Viral hepatitis
Exclusions: 050-079.99
151
67
1259
1609
556
26
10
93
60
15
71
Human immunodeficiency virus [HIV] disease
Exclusions: 050-079.99
3
0
17
44
12
0
0
3
3
0
78
Viral warts & HPV
Exclusions: 050-079.99
0
0
2
0
0
0
0
0
0
0
1–10 of 512 rows
of 52
Phecodes v1.2 (all)
Description
notes
any_resurvey
all_resurveys
are_female
are_male
gwas
olink_immuno_oncology_panel
metabolon_metabolomics
clinical_biochemistry
nightingale_nmr_metabolomics
olink_explore_panel
8
Intestinal infection
Exclusions: 001-009.99
1
1
8
10
4
1
0
1
1
0
8.5
Bacterial enteritis
0
10
4
69
46
26
0
0
6
0
2
8.51
Intestinal e.coli
Exclusions: 001-009.99
0
0
1
1
0
0
0
0
0
0
8.52
Intestinal infection due to C. difficile
Exclusions: 001-009.99
3
2
21
4
3
0
0
0
0
0
8.6
Viral Enteritis
0
0
0
13
7
2
0
0
1
0
0
8.7
Intestinal infection due to protozoa
0
0
0
1
3
2
0
0
1
0
0
10
Tuberculosis
Exclusions: 010-041.99
187
78
1276
1862
779
7
2
148
54
32
31
Diseases due to other mycobacteria
Exclusions: 010-041.99
0
0
1
0
0
0
0
0
0
0
38
Septicemia
Exclusions: 010-041.99
29
12
250
180
103
1
1
21
6
7
38.1
Gram negative septicemia
0
4
2
14
18
10
0
0
3
1
2
1–10 of 1332 rows
of 134
PhecodesX (parents)
Description
notes
any_resurvey
all_resurveys
are_female
are_male
gwas
olink_immuno_oncology_panel
metabolon_metabolomics
clinical_biochemistry
nightingale_nmr_metabolomics
olink_explore_panel
1
Salmonella (ID)
Sex=Both, ICD10 only=0, leaf=1
4
1
14
17
7
0
0
1
0
0
2
Staphylococcus (ID)
Sex=Both, ICD10 only=0, leaf=0
2
0
21
19
10
0
0
2
1
0
3
Escherichia coli (ID)
Sex=Both, ICD10 only=0, leaf=1
0
0
1
2
0
0
0
0
0
0
4
Streptococcus (ID)
Sex=Both, ICD10 only=0, leaf=0
33
15
373
273
162
2
0
20
10
8
5
Mycobacteria (ID)
Sex=Both, ICD10 only=0, leaf=0
47
15
423
448
193
3
1
34
16
9
6
Neisseria (ID)
Sex=Both, ICD10 only=0, leaf=0
0
0
4
5
1
0
0
0
0
0
7
Hemophilus infection (ID)
Sex=Both, ICD10 only=0, leaf=0
0
0
1
0
1
0
0
0
0
0
10
Corynebacterium (ID)
Sex=Both, ICD10 only=0, leaf=1
0
0
1
1
0
0
0
0
0
0
11
Klebsiella (ID)
Sex=Both, ICD10 only=0, leaf=1
0
0
3
11
2
0
0
0
0
0
13
Mycoplasma (ID)
Sex=Both, ICD10 only=0, leaf=1
1
1
26
18
10
0
0
1
1
0
1–10 of 522 rows
of 53
PhecodesX (all)
Description
notes
any_resurvey
all_resurveys
are_female
are_male
gwas
olink_immuno_oncology_panel
metabolon_metabolomics
clinical_biochemistry
nightingale_nmr_metabolomics
olink_explore_panel
1
Salmonella (ID)
Sex=Both, ICD10 only=0, leaf=1
4
1
14
17
7
0
0
1
0
0
2
Staphylococcus (ID)
Sex=Both, ICD10 only=0, leaf=0
2
0
21
19
10
0
0
2
1
0
2.1
Staphylococcus aureus (ID)
Sex=Both, ICD10 only=0, leaf=1
1
0
2
2
1
0
0
1
1
0
3
Escherichia coli (ID)
Sex=Both, ICD10 only=0, leaf=1
0
0
1
2
0
0
0
0
0
0
4
Streptococcus (ID)
Sex=Both, ICD10 only=0, leaf=0
33
15
373
273
162
2
0
20
10
8
4.1
Streptococcus pneumoniae (ID)
Sex=Both, ICD10 only=0, leaf=1
28
13
354
248
149
2
0
17
9
6
4.3
Group B Streptococcus (ID)
Sex=Both, ICD10 only=0, leaf=1
0
0
0
1
0
0
0
0
0
0
5
Mycobacteria (ID)
Sex=Both, ICD10 only=0, leaf=0
47
15
423
448
193
3
1
34
16
9
5.1
Mycobacterium tuberculosis (ID)
Sex=Both, ICD10 only=0, leaf=1
47
15
419
448
192
3
1
34
16
9
5.2
Nontuberculous mycobacteria (ID)
Sex=Both, ICD10 only=0, leaf=0
0
0
4
1
1
0
0
0
0
0
1–10 of 1922 rows
of 193


International Coordinating Centre, China Kadoorie Biobank (CKB), CTSU, Nuffield Department of Population Health, University of Oxford Old Road Campus, Headington, Oxford, OX3 7LF

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Copyright China Kadoorie Biobank (CKB), University of Oxford, (2024)

Page generated: 27-02-2024